Stem-loop oni-mir-199a-1

Accession

MI0034531

Description

Oreochromis niloticus oni-mir-199a-1 precursor miRNA

Sequence

29343104 reads, 24347.0 reads per million, 116 experiments

CCCAGUGUUCAGACUACCUGUUCaggaucuuacugguguACAGUAGUCUGCACAUUGGUU
.(((((((.((((((((.(((((((.......))))...))))))))))).)))))))..

Structure

-C       U        C   ---    ga 
  CCAGUGU CAGACUAC UGU   UCag  u
  ||||||| |||||||| |||   ||||  c
  GGUUACA GUCUGAUG ACA   gguc  u
UU       C        -   ugu    au 

Annotation confidence High

Genome context

CM001465.1: 13839763-13839822 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from oni-mir-199a-1

Mature oni-miR-199a-5p

• Accession: MIMAT0059298
• Description: Oreochromis niloticus oni-miR-199a-5p mature miRNA
• Sequence: 1 - CCCAGUGUUCAGACUACCUGUUC - 23
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-199a-3p

• Accession: MIMAT0042650
• Description: Oreochromis niloticus oni-miR-199a-3p mature miRNA
• Sequence: 40 - ACAGUAGUCUGCACAUUGGUU - 60
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774