Stem-loop oni-mir-30c

Accession

MI0034563

Description

Oreochromis niloticus oni-mir-30c precursor miRNA

Literature search

3 open access papers mention oni-mir-30c
(3 sentences)

Sequence

4420063 reads, 5324.0 reads per million, 110 experiments

UGUAAACAUCCUACACUCUCGGCaucugcccucugguggCCGGGAGUGGGACUGUUUGCACU
(((((((((((..(((((((((((((........))).))))))))))))).))))))))..

Structure

--        -   UA          -   ugc 
  UGUAAACA UCC  CACUCUCGGC auc   c
  |||||||| |||  |||||||||| |||    
  ACGUUUGU AGG  GUGAGGGCCg ugg   c
UC        C   --          g   ucu 

Annotation confidence High

Genome context

CM001456.1: 9402811-9402872 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-30c

Mature oni-miR-30c-5p

• Accession: MIMAT0042664
• Description: Oreochromis niloticus oni-miR-30c-5p mature miRNA
• Sequence: 1 - UGUAAACAUCCUACACUCUCGGC - 23
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-30c-3p

• Accession: MIMAT0059319
• Description: Oreochromis niloticus oni-miR-30c-3p mature miRNA
• Sequence: 40 - CCGGGAGUGGGACUGUUUGCACU - 62
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774