Stem-loop oni-mir-1388

Accession

MI0034590

Description

Oreochromis niloticus oni-mir-1388 precursor miRNA

Sequence

803618 reads, 792.0 reads per million, 108 experiments

AGGACUGUCCAACCUGAGAAUGgugauuuuaggcucaAUCUCAGGUUCGUCAGCCCAUG
.((.(((.(.(((((((((.((((........)).)).))))))))).).))).))...

Structure

--A  A   U C         A  -  gau 
   GG CUG C AACCUGAGA UG gu   u
   || ||| | ||||||||| || ||    
   CC GAC G UUGGACUCU ac cg   u
GUA  C   U C         A  u  gau 

Annotation confidence High

Genome context

CM001463.1: 14300136-14300194 [-]

Mature oni-miR-1388-5p

• Accession: MIMAT0042683
• Description: Oreochromis niloticus oni-miR-1388-5p mature miRNA
• Sequence: 1 - AGGACUGUCCAACCUGAGAAUG - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-1388-3p

• Accession: MIMAT0059348
• Description: Oreochromis niloticus oni-miR-1388-3p mature miRNA
• Sequence: 38 - AUCUCAGGUUCGUCAGCCCAUG - 59
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774