Stem-loop oni-mir-455-1

Accession

MI0034598

Description

Oreochromis niloticus oni-mir-455-1 precursor miRNA

Sequence

1147165 reads, 944.0 reads per million, 114 experiments

UAUGUGCCCUUGGACUACAUCGuggaagccagcaccaUGCAGUCCAUGGGCAUAUACAC
(((((((((.((((((.(((.(((........))).))).)))))).)))))))))...

Structure

---         U      A   C   gaa 
   UAUGUGCCC UGGACU CAU Gug   g
   ||||||||| |||||| ||| |||    
   AUAUACGGG ACCUGA GUa cac   c
CAC         U      C   c   gac 

Annotation confidence Medium

Genome context

CM001450.1: 15293206-15293264 [-]

Mature oni-miR-455-5p

• Accession: MIMAT0042689
• Description: Oreochromis niloticus oni-miR-455-5p mature miRNA
• Sequence: 1 - UAUGUGCCCUUGGACUACAUCG - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-455-3p

• Accession: MIMAT0059356
• Description: Oreochromis niloticus oni-miR-455-3p mature miRNA
• Sequence: 38 - UGCAGUCCAUGGGCAUAUACAC - 59
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774