Stem-loop oni-mir-218b

Accession

MI0034607

Description

Oreochromis niloticus oni-mir-218b precursor miRNA

Literature search

1 open access papers mention oni-mir-218b
(4 sentences)

Sequence

551030 reads, 393.0 reads per million, 105 experiments

UUGUGCUUGAUCUAACCAUGCAgugcaucuucugucCAUGGUUGUGCCAAGCACCUUG
..(((((((...(((((((((((........)))..))))))))...)))))))....

Structure

--UU       AUC        --   ugc 
    GUGCUUG   UAACCAUG  CAg   a
    |||||||   ||||||||  |||    
    CACGAAC   GUUGGUAC  guc   u
GUUC       CGU        cu   uuc 

Annotation confidence High

Genome context

CM001450.1: 19615875-19615932 [-]

Mature oni-miR-218b-5p

• Accession: MIMAT0042698
• Description: Oreochromis niloticus oni-miR-218b-5p mature miRNA
• Sequence: 1 - UUGUGCUUGAUCUAACCAUGCA - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-218b-3p

• Accession: MIMAT0059365
• Description: Oreochromis niloticus oni-miR-218b-3p mature miRNA
• Sequence: 37 - CAUGGUUGUGCCAAGCACCUUG - 58
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774