Stem-loop oni-mir-17a-2

Accession

MI0034614

Description

Oreochromis niloticus oni-mir-17a-2 precursor miRNA

Literature search

2 open access papers mention oni-mir-17a-2
(2 sentences)

Sequence

761342 reads, 880.0 reads per million, 106 experiments

CAAAGUGCUUACAGUGCAGGUAguuuuguucaauucuACUGCAGUGAAGGCACUUUCAGC
.(((((((((.((.(((((.(((..((....))..)))))))).)).)))))))))....

Structure

---C         A  G     G   uu  g 
    AAAGUGCUU CA UGCAG UAg  uu u
    ||||||||| || ||||| |||  ||  
    UUUCACGGA GU ACGUC Auc  aa u
CGAC         A  G     -   uu  c 

Annotation confidence High

Genome context

GL831311.1: 1392624-1392683 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from oni-mir-17a-2

Mature oni-miR-17a-5p

• Accession: MIMAT0042703
• Description: Oreochromis niloticus oni-miR-17a-5p mature miRNA
• Sequence: 1 - CAAAGUGCUUACAGUGCAGGUA - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-17a-2-3p

• Accession: MIMAT0059372
• Description: Oreochromis niloticus oni-miR-17a-2-3p mature miRNA
• Sequence: 38 - ACUGCAGUGAAGGCACUUUCAGC - 60
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774