Stem-loop oni-mir-17a-1

Accession

MI0034615

Description

Oreochromis niloticus oni-mir-17a-1 precursor miRNA

Literature search

2 open access papers mention oni-mir-17a-1
(2 sentences)

Sequence

749406 reads, 865.0 reads per million, 106 experiments

CAAAGUGCUUACAGUGCAGGUAguacuauggaauaccuaCUGCAGUGGAGGCACUUACAGC
..(((((((..((.(((((...(((........)))...))))).))..))))))).....

Structure

---CA       UA  G     GUA   cua 
     AAGUGCU  CA UGCAG   gua   u
     |||||||  || |||||   |||    
     UUCACGG  GU ACGUC   cau   g
CGACA       AG  G     auc   aag 

Annotation confidence High

Genome context

CM001444.1: 7384950-7385010 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from oni-mir-17a-1

Mature oni-miR-17a-5p

• Accession: MIMAT0042703
• Description: Oreochromis niloticus oni-miR-17a-5p mature miRNA
• Sequence: 1 - CAAAGUGCUUACAGUGCAGGUA - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-17a-1-3p

• Accession: MIMAT0059373
• Description: Oreochromis niloticus oni-miR-17a-1-3p mature miRNA
• Sequence: 40 - CUGCAGUGGAGGCACUUACAGC - 61
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774