Stem-loop oni-mir-19d

Accession

MI0034618

Description

Oreochromis niloticus oni-mir-19d precursor miRNA

Sequence

1377174 reads, 1335.0 reads per million, 105 experiments

AGCUUUGCAGGGUGGGCAGUCAGCcugugugcauaaggaccagcUGUGCAAACCCAUGCAAAACUG
((.((((((((((..(((..((((.((.((.(....).)))))))))))..)))).)))))).)).

Structure

-  C      -    GG   GU    c  u  g a 
 AG UUUGCA GGGU  GCA  CAGC ug gu c u
 || |||||| ||||  |||  |||| || || |  
 UC AAACGU CCCA  CGU  GUcg ac ca g a
G  A      A    AA   --    -  -  g a 

Annotation confidence High

Genome context

CM001445.1: 9821576-9821641 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from oni-mir-19d

Mature oni-miR-19d-5p

• Accession: MIMAT0059376
• Description: Oreochromis niloticus oni-miR-19d-5p mature miRNA
• Sequence: 1 - AGCUUUGCAGGGUGGGCAGUCAGC - 24
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-19d-3p

• Accession: MIMAT0042705
• Description: Oreochromis niloticus oni-miR-19d-3p mature miRNA
• Sequence: 45 - UGUGCAAACCCAUGCAAAACUG - 66
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774