Stem-loop oni-mir-16b

Accession

MI0034621

Description

Oreochromis niloticus oni-mir-16b precursor miRNA

Literature search

1 open access papers mention oni-mir-16b
(6 sentences)

Sequence

7704136 reads, 6005.0 reads per million, 107 experiments

UAGCAGCACGUAAAUAUUGGAGuuaacacucuagcugaagucuCCAGUAUUGAUCGUGCUGCUGAA
((((((((((..((((((((((.....((((.....).)))))))))))))...))))))))))..

Structure

--          -UA          uuaac   - u 
  UAGCAGCACG   AAUAUUGGAG     acu c a
  ||||||||||   ||||||||||     ||| | g
  GUCGUCGUGC   UUAUGACCuc     uga g c
AA          UAG          -----   a u 

Annotation confidence High

Genome context

CM001459.1: 12109046-12109111 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-16b

Mature oni-miR-16b-5p

• Accession: MIMAT0042708
• Description: Oreochromis niloticus oni-miR-16b-5p mature miRNA
• Sequence: 1 - UAGCAGCACGUAAAUAUUGGAG - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-16b-3p

• Accession: MIMAT0059379
• Description: Oreochromis niloticus oni-miR-16b-3p mature miRNA
• Sequence: 44 - CCAGUAUUGAUCGUGCUGCUGAA - 66
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774