Stem-loop oni-mir-19a

Accession

MI0034625

Description

Oreochromis niloticus oni-mir-19a precursor miRNA

Sequence

2048333 reads, 2105.0 reads per million, 105 experiments

AGUUUUGCAUAGUUGCGCUGCaagaagaaauaaguUGUGCAAAUCUAUGCAAAACUG
((((((((((((((((((.((............)).))))))..)))))))))))).

Structure

-            --      U  aagaa 
 AGUUUUGCAUAG  UUGCGC GC     g
 ||||||||||||  |||||| ||      
 UCAAAACGUAUC  AACGUG ug     a
G            UA      U  aauaa 

Annotation confidence High

Genome context

GL831311.1: 1393234-1393290 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from oni-mir-19a

Mature oni-miR-19a-5p

• Accession: MIMAT0059383
• Description: Oreochromis niloticus oni-miR-19a-5p mature miRNA
• Sequence: 1 - AGUUUUGCAUAGUUGCGCUGC - 21
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-19a-3p

• Accession: MIMAT0042711
• Description: Oreochromis niloticus oni-miR-19a-3p mature miRNA
• Sequence: 36 - UGUGCAAAUCUAUGCAAAACUG - 57
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774