Stem-loop oni-mir-200a

Accession

MI0034626

Description

Oreochromis niloticus oni-mir-200a precursor miRNA

Sequence

caucuuacccgacagugcuggacuguacuacuguuguucUAACACUGUCUGGUAACGAUGUU
(((((((((.(((((((.((((....((....))...)))).))))))).))))).))))..

Structure

--    -     c       c    cugu  u 
  cauc uuacc gacagug ugga    ac a
  |||| ||||| ||||||| ||||    ||  
  GUAG AAUGG CUGUCAC AUcu    ug c
UU    C     U       A    -ugu  u 

Annotation confidence Not enough data

Genome context

GL831308.1: 160022-160083 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from oni-mir-200a

Mature oni-miR-200a

• Accession: MIMAT0042712
• Description: Oreochromis niloticus oni-miR-200a mature miRNA
• Sequence: 40 - UAACACUGUCUGGUAACGAUGUU - 62
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774