Stem-loop oni-mir-138-2

Accession

MI0034629

Description

Oreochromis niloticus oni-mir-138-2 precursor miRNA

Literature search

1 open access papers mention oni-mir-138-2
(1 sentences)

Sequence

595284 reads, 417.0 reads per million, 103 experiments

AGCUGGUGUUGUGAAUCAGGCCGcugaagugucacacacgGCUUUUUCACAACACCAGGGU
..(((((((((((((..((((((.((..........)))))))).)))))))))))))...

Structure

-AG             UC      c  aagu 
   CUGGUGUUGUGAA  AGGCCG ug    g
   |||||||||||||  |||||| ||     
   GACCACAACACUU  UUCGgc ac    u
UGG             -U      -  acac 

Annotation confidence High

Genome context

GL831461.1: 346188-346248 [+]

Mature oni-miR-138-5p

• Accession: MIMAT0042714
• Description: Oreochromis niloticus oni-miR-138-5p mature miRNA
• Sequence: 1 - AGCUGGUGUUGUGAAUCAGGCCG - 23
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-138-2-3p

• Accession: MIMAT0059387
• Description: Oreochromis niloticus oni-miR-138-2-3p mature miRNA
• Sequence: 41 - GCUUUUUCACAACACCAGGGU - 61
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774