Stem-loop oni-mir-107

Accession

MI0034630

Description

Oreochromis niloticus oni-mir-107 precursor miRNA

Literature search

3 open access papers mention oni-mir-107
(3 sentences)

Sequence

1680225 reads, 1429.0 reads per million, 109 experiments

AGCUUCUUUACAGUGUUGCCUUGUggcauggcgaucaAGCAGCAUUGUACAGGGCUAUC
((((.((.(((((((((((.((((.((...)).).)))))))))))))).))))))...

Structure

---    U  U           C   - g  a 
   AGCU CU UACAGUGUUGC UUG U gc  
   |||| || ||||||||||| ||| | || u
   UCGG GA AUGUUACGACG Aac a cg  
CUA    -  C           -   u g  g 

Annotation confidence High

Genome context

CM001456.1: 10826-10884 [-]

Mature oni-miR-107-5p

• Accession: MIMAT0059389
• Description: Oreochromis niloticus oni-miR-107-5p mature miRNA
• Sequence: 1 - AGCUUCUUUACAGUGUUGCCUUGU - 24
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-107-3p

• Accession: MIMAT0042715
• Description: Oreochromis niloticus oni-miR-107-3p mature miRNA
• Sequence: 38 - AGCAGCAUUGUACAGGGCUAUC - 59
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774