Stem-loop oni-mir-338-3

Accession

MI0034642

Description

Oreochromis niloticus oni-mir-338-3 precursor miRNA

Sequence

2531414 reads, 2390.0 reads per million, 106 experiments

AACAAUAUCCUGGUGCUGCCUGAGUgcuccuuaaagacUCCAGCAUCAGUGAUUUUGUUG
(((((.((((((((((((...((((.((......))))))))))))))).))).))))).

Structure

-     U   -         CCU    g  cc 
 AACAA AUC CUGGUGCUG   GAGU cu  u
 ||||| ||| |||||||||   |||| ||   
 UUGUU UAG GACUACGAC   CUca ga  u
G     U   U         ---    -  aa 

Annotation confidence High

Genome context

CM001451.1: 23818533-23818592 [-]

Mature oni-miR-338-3-5p

• Accession: MIMAT0059401
• Description: Oreochromis niloticus oni-miR-338-3-5p mature miRNA
• Sequence: 1 - AACAAUAUCCUGGUGCUGCCUGAGU - 25
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-338-3p

• Accession: MIMAT0042724
• Description: Oreochromis niloticus oni-miR-338-3p mature miRNA
• Sequence: 39 - UCCAGCAUCAGUGAUUUUGUUG - 60
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774