Stem-loop oni-mir-489

Accession

MI0034654

Description

Oreochromis niloticus oni-mir-489 precursor miRNA

Sequence

265209 reads, 259.0 reads per million, 106 experiments

UGGUCGUAUGUAUGACGUCAUUUacuucaaugcuuggagUGACAUCAUAUGUACGGCUGCU
.((((((((((((((.(((....(((((((...)))))))))).))))))))))))))...

Structure

--U              C   AUUU       u 
   GGUCGUAUGUAUGA GUC    acuucaa  
   |||||||||||||| |||    ||||||| g
   UCGGCAUGUAUACU CAG    Ugagguu  
UCG              A   ----       c 

Annotation confidence Medium

Genome context

CM001464.1: 24773565-24773625 [+]

Mature oni-miR-489-5p

• Accession: MIMAT0059413
• Description: Oreochromis niloticus oni-miR-489-5p mature miRNA
• Sequence: 1 - UGGUCGUAUGUAUGACGUCAUUU - 23
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-489-3p

• Accession: MIMAT0042732
• Description: Oreochromis niloticus oni-miR-489-3p mature miRNA
• Sequence: 40 - UGACAUCAUAUGUACGGCUGCU - 61
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774