miRBase entry: oni-mir-24a-2

Stem-loop oni-mir-24a-2

Accession

MI0034655

Description

Oreochromis niloticus oni-mir-24a-2 precursor miRNA

Sequence

ugccugcugugcugauaaucagugugugacgucggcUGGCUCAGUUCAGCAGGAACAG
..(((((((.(((((...(((((...........))))).))))).))))))).....

Structure

---ug       u     uaa     gugu 
     ccugcug gcuga   ucagu    g
     ||||||| |||||   |||||    a
     GGACGAC UGACU   GGUcg    c
GACAA       U     --C     gcug

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

CM001447.1: 983916-983973 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from oni-mir-24a-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oni-miR-24a

Accession	MIMAT0042733
Description	Oreochromis niloticus oni-miR-24a mature miRNA
Sequence	37 - UGGCUCAGUUCAGCAGGAACAG - 58
Evidence	experimental Illumina [1-2]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381

PubMed ID: 25199625
Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
BMC Genomics (2014) 15:774