Stem-loop oni-mir-212b

Accession

MI0034672

Description

Oreochromis niloticus oni-mir-212b precursor miRNA

Literature search

2 open access papers mention oni-mir-212b
(11 sentences)

Sequence

651992 reads, 473.0 reads per million, 107 experiments

ACCUUGGCUCUAGACUGCUUACUgcuaaaacuccuccaaaguacagUAACAGUCUACAGUCAUGGCU
.((.(((((.(((((((.((((((...................))))))))))))).))))).))..

Structure

-A  U     C       C      cuaaaacu 
  CC UGGCU UAGACUG UUACUg        c
  || ||||| ||||||| ||||||        c
  GG ACUGA AUCUGAC AAUgac        u
UC  U     C       -      augaaacc 

Annotation confidence High

Genome context

CM001457.1: 21905079-21905145 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-212b

Mature oni-miR-212b-5p

• Accession: MIMAT0059433
• Description: Oreochromis niloticus oni-miR-212b-5p mature miRNA
• Sequence: 1 - ACCUUGGCUCUAGACUGCUUACU - 23
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-212b-3p

• Accession: MIMAT0042746
• Description: Oreochromis niloticus oni-miR-212b-3p mature miRNA
• Sequence: 47 - UAACAGUCUACAGUCAUGGCU - 67
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774