Stem-loop oni-mir-365

Accession

MI0034675

Description

Oreochromis niloticus oni-mir-365 precursor miRNA

Literature search

1 open access papers mention oni-mir-365
(1 sentences)

Sequence

299126 reads, 319.0 reads per million, 111 experiments

AGGGACUUUUAGGGGCAGCUGUGuuuuauuaacccagucaUAAUGCCCCUAAAAAUCCUUAU
(((((.(((((((((((((((.(((.....))).)))).....))))))))))).)))))..

Structure

--     C           -----    U   u 
  AGGGA UUUUAGGGGCA     GCUG Guu u
  ||||| |||||||||||     |||| ||| a
  UUCCU AAAAUCCCCGU     ugac caa u
UA     A           AAUac    c   u 

Annotation confidence High

Genome context

CM001449.1: 20414266-20414327 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-365

Mature oni-miR-365-5p

• Accession: MIMAT0059436
• Description: Oreochromis niloticus oni-miR-365-5p mature miRNA
• Sequence: 1 - AGGGACUUUUAGGGGCAGCUGUG - 23
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-365-3p

• Accession: MIMAT0042749
• Description: Oreochromis niloticus oni-miR-365-3p mature miRNA
• Sequence: 41 - UAAUGCCCCUAAAAAUCCUUAU - 62
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774