Stem-loop oni-mir-727a

Accession

MI0034676

Description

Oreochromis niloticus oni-mir-727a precursor miRNA

Literature search

1 open access papers mention oni-mir-727a
(11 sentences)

Sequence

155215 reads, 124.0 reads per million, 104 experiments

UCAGUCUUCAAUUCCUCCCAGCccauuacuauggaaacugugaGUUGAGGCGAGUUGAAGACUa
..(((((((((((((((.(((.((((....))))...))).))).......)))))))))))).

Structure

UC            -------   C   --C    u 
  AGUCUUCAAUUC       CUC CAG   ccau a
  ||||||||||||       ||| |||   ||||  
  UCAGAAGUUGAG       Gag guc   ggua c
-a            CGGAGUU   u   aaa    u 

Annotation confidence Medium

Genome context

GL831264.1: 1388161-1388224 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-727a

Mature oni-miR-727a-5p

• Accession: MIMAT0042750
• Description: Oreochromis niloticus oni-miR-727a-5p mature miRNA
• Sequence: 1 - UCAGUCUUCAAUUCCUCCCAGC - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-727a-3p

• Accession: MIMAT0059437
• Description: Oreochromis niloticus oni-miR-727a-3p mature miRNA
• Sequence: 44 - GUUGAGGCGAGUUGAAGACU - 63
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774