Stem-loop oni-mir-219b-1

Accession

MI0034683

Description

Oreochromis niloticus oni-mir-219b-1 precursor miRNA

Sequence

94941 reads, 97.0 reads per million, 76 experiments

UGAUUGUCCAAACGCAAUUCUUGuauuucaucuccauauccaGGAGUUGUGGCUGGACAUCAUG
((((.(((((..(((((((((((.((...........)).)))))))))))..)))))))))..

Structure

--    U     AA           u  uuca 
  UGAU GUCCA  CGCAAUUCUUG au    u
  |||| |||||  ||||||||||| ||    c
  ACUA CAGGU  GUGUUGAGGac ua    u
GU    -     CG           c  uacc 

Annotation confidence High

Genome context

CM001454.1: 6729283-6729346 [+]

Mature oni-miR-219b-5p

• Accession: MIMAT0042759
• Description: Oreochromis niloticus oni-miR-219b-5p mature miRNA
• Sequence: 1 - UGAUUGUCCAAACGCAAUUCUUG - 23
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-219b-1-3p

• Accession: MIMAT0059441
• Description: Oreochromis niloticus oni-miR-219b-1-3p mature miRNA
• Sequence: 43 - GGAGUUGUGGCUGGACAUCAUG - 64
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774