Stem-loop oni-mir-456

Accession

MI0034691

Description

Oreochromis niloticus oni-mir-456 precursor miRNA

Sequence

810171 reads, 783.0 reads per million, 105 experiments

gGCAGGCAUCUUCCCAGCCUACauguagauccaggaaucugCAGGCUGGUUAGAUGGUUGUCA
(((((.(((((..(((((((....((((((......)))))))))))))..))))).))))).

Structure

-     G     UC       ACau      cc 
 gGCAG CAUCU  CCAGCCU    guagau  a
 ||||| |||||  |||||||    ||||||   
 CUGUU GUAGA  GGUCGGA    Cgucua  g
A     G     UU       ----      ag 

Annotation confidence High

Genome context

GL831685.1: 155063-155125 [-]

Mature oni-miR-456-5p

• Accession: MIMAT0059452
• Description: Oreochromis niloticus oni-miR-456-5p mature miRNA
• Sequence: 2 - GCAGGCAUCUUCCCAGCCUAC - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-456-3p

• Accession: MIMAT0042768
• Description: Oreochromis niloticus oni-miR-456-3p mature miRNA
• Sequence: 42 - CAGGCUGGUUAGAUGGUUGUCA - 63
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774