Stem-loop oni-mir-219b-2

Accession

MI0034700

Description

Oreochromis niloticus oni-mir-219b-2 precursor miRNA

Sequence

84850 reads, 92.0 reads per million, 75 experiments

UGAUUGUCCAAACGCAAUUCUUGcaugugcuuuugugaaaccaGGAGUUGUGGAUGGACAUCACG
((((.(((((..(((((((((((....(((....)))....)))))))))))..)))))))))..

Structure

--    U     AA           caug   u 
  UGAU GUCCA  CGCAAUUCUUG    ugc u
  |||| |||||  |||||||||||    |||  
  ACUA CAGGU  GUGUUGAGGac    gug u
GC    -     AG           caaa   u 

Annotation confidence High

Genome context

CM001464.1: 347721-347785 [-]

Mature oni-miR-219b-5p

• Accession: MIMAT0042759
• Description: Oreochromis niloticus oni-miR-219b-5p mature miRNA
• Sequence: 1 - UGAUUGUCCAAACGCAAUUCUUG - 23
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-219b-2-3p

• Accession: MIMAT0059442
• Description: Oreochromis niloticus oni-miR-219b-2-3p mature miRNA
• Sequence: 44 - GGAGUUGUGGAUGGACAUCACG - 65
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774