Stem-loop oni-mir-129-5

Accession

MI0034721

Description

Oreochromis niloticus oni-mir-129-5 precursor miRNA

Literature search

2 open access papers mention oni-mir-129-5
(12 sentences)

Sequence

1308316 reads, 1006.0 reads per million, 100 experiments

agcagcagcagcagauaauguccuucacgaauCUUUUUGCGGUCUGGGCUUGC
(((..((((.(((((.....((......)).....))))).).))).)))...

Structure

---   ag   - a     uaaug  cu 
   agc  cag c gcaga     uc  u
   |||  ||| | |||||     ||   
   UCG  GUC G CGUUU     ag  c
CGU   -G   U G     UUCua  ca 

Annotation confidence Not enough data

Genome context

GL831310.1: 1105550-1105602 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-129-5

Mature oni-miR-129-5-3p

• Accession: MIMAT0059398
• Description: Oreochromis niloticus oni-miR-129-5-3p mature miRNA
• Sequence: 33 - CUUUUUGCGGUCUGGGCUUGC - 53
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381