Stem-loop oni-mir-731

Accession

MI0034728

Description

Oreochromis niloticus oni-mir-731 precursor miRNA

Sequence

1951899 reads, 2233.0 reads per million, 105 experiments

AAUGACACGUUUUCUCCCGGAUUGcugcgagcaggaaacgcAACCGGGAAUUUCGUGUCAGCC
..(((((((.....((((((.((((..(......)....))))))))))....)))))))...

Structure

-AA       UUUUC      A    --ug ga 
   UGACACG     UCCCGG UUGc    c  g
   |||||||     |||||| ||||    |   
   ACUGUGC     AGGGCC AAcg    g  c
CCG       -UUUA      -    caaa ga 

Annotation confidence High

Genome context

CM001463.1: 31138896-31138958 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-731

Mature oni-miR-731-5p

• Accession: MIMAT0042781
• Description: Oreochromis niloticus oni-miR-731-5p mature miRNA
• Sequence: 1 - AAUGACACGUUUUCUCCCGGAUUG - 24
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-731-3p

• Accession: MIMAT0059472
• Description: Oreochromis niloticus oni-miR-731-3p mature miRNA
• Sequence: 42 - AACCGGGAAUUUCGUGUCAGCC - 63
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774