Stem-loop oni-mir-23c

Accession

MI0034738

Description

Oreochromis niloticus oni-mir-23c precursor miRNA

Sequence

58406 reads, 72.0 reads per million, 107 experiments

UGUGUCUCUGGCAAGAUGAUUUgguccacaaaguugaaAUCACAUUGCCAGAGAUUACUG
.(((((((((((((..((((((.(..........).))))))..)))))))))).)))..

Structure

-U   -          GA      g ucca 
  GUG UCUCUGGCAA  UGAUUU g    c
  ||| ||||||||||  |||||| |     
  CAU AGAGACCGUU  ACUAaa u    a
GU   U          AC      g ugaa 

Annotation confidence High

Genome context

CM001450.1: 30914902-30914961 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from oni-mir-23c

Mature oni-miR-23c-5p

• Accession: MIMAT0059480
• Description: Oreochromis niloticus oni-miR-23c-5p mature miRNA
• Sequence: 1 - UGUGUCUCUGGCAAGAUGAUUU - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-23c-3p

• Accession: MIMAT0042793
• Description: Oreochromis niloticus oni-miR-23c-3p mature miRNA
• Sequence: 39 - AUCACAUUGCCAGAGAUUACUG - 60
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774