Stem-loop oni-mir-196b

Accession

MI0034739

Description

Oreochromis niloticus oni-mir-196b precursor miRNA

Literature search

1 open access papers mention oni-mir-196b
(2 sentences)

Sequence

159748 reads, 141.0 reads per million, 80 experiments

UAGGUAGUCUCAUGUUGUUGGGCuauauuauuucucCCACAACACGAAACUGCCUUGA
.(((((((.((.((((((.(((.............))))))))).)).)))))))...

Structure

--U       C  A      U   Cuaua 
   AGGUAGU UC UGUUGU GGG     u
   ||||||| || |||||| |||     u
   UCCGUCA AG ACAACA CCc     a
AGU       A  C      -   ucuuu 

Annotation confidence High

Genome context

CM001454.1: 6204066-6204123 [-]

Mature oni-miR-196b-5p

• Accession: MIMAT0042794
• Description: Oreochromis niloticus oni-miR-196b-5p mature miRNA
• Sequence: 1 - UAGGUAGUCUCAUGUUGUUGGGC - 23
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-196b-3p

• Accession: MIMAT0059481
• Description: Oreochromis niloticus oni-miR-196b-3p mature miRNA
• Sequence: 37 - CCACAACACGAAACUGCCUUGA - 58
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774