Stem-loop oni-mir-216a

Accession

MI0034742

Description

Oreochromis niloticus oni-mir-216a precursor miRNA

Literature search

1 open access papers mention oni-mir-216a
(3 sentences)

Sequence

646062 reads, 842.0 reads per million, 105 experiments

AAAUCUCAGCUGGCAACUGUGAgucguucacuagcugcucuCACAAUGGCCUCUGGGAUUAUG
.((((((((..(((...((((((..((.........)).))))))...))).))))))))...

Structure

--A        CU   AAC      uc  uca 
   AAUCUCAG  GGC   UGUGAg  gu   c
   ||||||||  |||   ||||||  ||   u
   UUAGGGUC  CCG   ACACuc  cg   a
GUA        -U   GUA      -u  ucg 

Annotation confidence High

Genome context

CM001456.1: 20187028-20187090 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from oni-mir-216a

Mature oni-miR-216a-5p

• Accession: MIMAT0042796
• Description: Oreochromis niloticus oni-miR-216a-5p mature miRNA
• Sequence: 1 - AAAUCUCAGCUGGCAACUGUGA - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-216a-3p

• Accession: MIMAT0059483
• Description: Oreochromis niloticus oni-miR-216a-3p mature miRNA
• Sequence: 42 - CACAAUGGCCUCUGGGAUUAUG - 63
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774