Stem-loop oni-mir-19c

Accession

MI0034755

Description

Oreochromis niloticus oni-mir-19c precursor miRNA

Sequence

1344693 reads, 1230.0 reads per million, 110 experiments

AGUUUUGAUGGCUUGCUCUCAGCUucugaaagacucugcUGUGCAAAUCCAUGCAAAGCUCU
(((((((((((.((((...((((..............)))).))))..)))).)))))))..

Structure

--       -    -C    UCU    Uucuga 
  AGUUUUG AUGG  UUGC   CAGC      a
  ||||||| ||||  ||||   ||||       
  UCGAAAC UACC  AACG   GUcg      a
UC       G    UA    --U    ucucag 

Annotation confidence High

Genome context

CM001449.1: 27553256-27553317 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-19c

Mature oni-miR-19c-5p

• Accession: MIMAT0059496
• Description: Oreochromis niloticus oni-miR-19c-5p mature miRNA
• Sequence: 1 - AGUUUUGAUGGCUUGCUCUCAGCU - 24
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-19c-3p

• Accession: MIMAT0042808
• Description: Oreochromis niloticus oni-miR-19c-3p mature miRNA
• Sequence: 40 - UGUGCAAAUCCAUGCAAAGCUCU - 62
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774