miRBase entry: oni-mir-219c

Stem-loop oni-mir-219c

Accession

MI0034760

Description

Oreochromis niloticus oni-mir-219c precursor miRNA

Sequence

UGAUUGUCCAAACGCAAUUCUUGaguaaacucauauucaaccccaAGAAUUGUGUAUGGACAUCUGU
.(((.(((((.((((((((((((....................)))))))))))).))))))))...

Structure

--U   U     A            aguaaacuc 
   GAU GUCCA ACGCAAUUCUUG         a
   ||| ||||| ||||||||||||          
   CUA CAGGU UGUGUUAAGAac         u
UGU   -     A            cccaacuua

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

CM001450.1: 22024213-22024279 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-219c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oni-miR-219c-5p

Accession	MIMAT0042816
Description	Oreochromis niloticus oni-miR-219c-5p mature miRNA
Sequence	1 - UGAUUGUCCAAACGCAAUUCUUG - 23
Evidence	experimental Illumina [2]

Mature oni-miR-219c-3p

Accession	MIMAT0042817
Description	Oreochromis niloticus oni-miR-219c-3p mature miRNA
Sequence	46 - AGAAUUGUGUAUGGACAUCUGU - 67
Evidence	experimental Illumina [1-2]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381

PubMed ID: 25199625
Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
BMC Genomics (2014) 15:774