Stem-loop oni-mir-219c

Accession

MI0034760

Description

Oreochromis niloticus oni-mir-219c precursor miRNA

Sequence

UGAUUGUCCAAACGCAAUUCUUGaguaaacucauauucaaccccaAGAAUUGUGUAUGGACAUCUGU
.(((.(((((.((((((((((((....................)))))))))))).))))))))...

Structure

--U   U     A            aguaaacuc 
   GAU GUCCA ACGCAAUUCUUG         a
   ||| ||||| ||||||||||||          
   CUA CAGGU UGUGUUAAGAac         u
UGU   -     A            cccaacuua 

Annotation confidence Not enough data

Genome context

CM001450.1: 22024213-22024279 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-219c

Mature oni-miR-219c-5p

• Accession: MIMAT0042816
• Description: Oreochromis niloticus oni-miR-219c-5p mature miRNA
• Sequence: 1 - UGAUUGUCCAAACGCAAUUCUUG - 23
• Evidence: experimental ; Illumina [2]

Mature oni-miR-219c-3p

• Accession: MIMAT0042817
• Description: Oreochromis niloticus oni-miR-219c-3p mature miRNA
• Sequence: 46 - AGAAUUGUGUAUGGACAUCUGU - 67
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774