Stem-loop oni-mir-99a

Accession

MI0034761

Description

Oreochromis niloticus oni-mir-99a precursor miRNA

Literature search

1 open access papers mention oni-mir-99a
(4 sentences)

Sequence

7808035 reads, 5481.0 reads per million, 106 experiments

AGACCUGUAGAUACAAGCUUGUggugucacuuaaCACAAGUUCGGAUCUACGGGUUu
.((((((((((..(.((((((((...........)))))))).)..)))))))))).

Structure

A          UA A        gugu 
 GACCUGUAGA  C AGCUUGUg    c
 ||||||||||  | ||||||||    a
 UUGGGCAUCU  G UUGAACAC    c
u          AG C        aauu 

Annotation confidence Medium

Genome context

CM001457.1: 402009-402065 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from oni-mir-99a

Mature oni-miR-99a-5p

• Accession: MIMAT0042818
• Description: Oreochromis niloticus oni-miR-99a-5p mature miRNA
• Sequence: 1 - AGACCUGUAGAUACAAGCUUGU - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-99a-3p

• Accession: MIMAT0059498
• Description: Oreochromis niloticus oni-miR-99a-3p mature miRNA
• Sequence: 35 - CACAAGUUCGGAUCUACGGGUU - 56
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774