Stem-loop oni-mir-449b

Accession

MI0034769

Description

Oreochromis niloticus oni-mir-449b precursor miRNA

Sequence

UGGCAGUGUAAUGUUAGCUGACguuucuucagcCAGCUCACACUGCUCUGCUACU
((((((.(((.(((.(((((.(.........).))))).))).))).))))))..

Structure

--      U   A   U     A guu 
  UGGCAG GUA UGU AGCUG C   u
  |||||| ||| ||| ||||| |   c
  AUCGUC CGU ACA UCGAC g   u
UC      U   C   C     c acu 

Annotation confidence Not enough data

Genome context

CM001455.1: 25967595-25967649 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from oni-mir-449b

Mature oni-miR-449b-5p

• Accession: MIMAT0042830
• Description: Oreochromis niloticus oni-miR-449b-5p mature miRNA
• Sequence: 1 - UGGCAGUGUAAUGUUAGCUGAC - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-449b-3p

• Accession: MIMAT0042831
• Description: Oreochromis niloticus oni-miR-449b-3p mature miRNA
• Sequence: 34 - CAGCUCACACUGCUCUGCUACU - 55
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774