Stem-loop oni-mir-449a

Accession

MI0034770

Description

Oreochromis niloticus oni-mir-449a precursor miRNA

Sequence

46757 reads, 33.0 reads per million, 100 experiments

AGGCAGUGUCUUGUUAGCUGGUaguuucuuccuguccCAGCUCACCUGCUGCUGCCCUC
.(((((((.(..((.(((((((((.......)))..)))))).))..).)))))))...

Structure

--A       U UU  U      --   uu 
   GGCAGUG C  GU AGCUGG  Uag  u
   ||||||| |  || ||||||  |||  c
   CCGUCGU G  CA UCGACc  guc  u
CUC       C UC  C      cu   cu 

Annotation confidence High

Genome context

CM001455.1: 25967806-25967864 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from oni-mir-449a

Mature oni-miR-449a-5p

• Accession: MIMAT0042832
• Description: Oreochromis niloticus oni-miR-449a-5p mature miRNA
• Sequence: 1 - AGGCAGUGUCUUGUUAGCUGGU - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-449a-3p

• Accession: MIMAT0059502
• Description: Oreochromis niloticus oni-miR-449a-3p mature miRNA
• Sequence: 38 - CAGCUCACCUGCUGCUGCCCUC - 59
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774