Stem-loop oni-mir-10544

Accession

MI0034772

Description

Oreochromis niloticus oni-mir-10544 precursor miRNA

Literature search

1 open access papers mention oni-mir-10544
(1 sentences)

Sequence

43892 reads, 42.0 reads per million, 80 experiments

UAGGCGUGUCACUGCGUGUCACAgucacugcuUGCGCACGGGGCCACGCCCUGC
..((((((...((.(((((((.(((....))))).))))).)).))))))....

Structure

--UA      UCA  G     -  C   c 
    GGCGUG   CU CGUGU CA Agu a
    ||||||   || ||||| || |||  
    CCGCAC   GG GCACG GU ucg c
CGUC      --C  G     C  -   u 

Annotation confidence High

Genome context

CM001459.1: 19615093-19615146 [+]

Mature oni-miR-10544-5p

• Accession: MIMAT0042834
• Description: Oreochromis niloticus oni-miR-10544-5p mature miRNA
• Sequence: 1 - UAGGCGUGUCACUGCGUGUCACA - 23
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-10544-3p

• Accession: MIMAT0059504
• Description: Oreochromis niloticus oni-miR-10544-3p mature miRNA
• Sequence: 33 - UGCGCACGGGGCCACGCCCUGC - 54
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774