Stem-loop oni-mir-10573a

Accession

MI0034775

Description

Oreochromis niloticus oni-mir-10573a precursor miRNA

Sequence

527038 reads, 556.0 reads per million, 116 experiments

AACUCCAUUCCUCGAAGGCCGGugucaugcaacuuuuccaUGCCCUCGAGGACUGGAGUUU
(((((((.(((((((.(((.((...............))..))).))))))).))))))).

Structure

-       U       A   -C  ugucau 
 AACUCCA UCCUCGA GGC  GG      g
 ||||||| ||||||| |||  ||      c
 UUGAGGU AGGAGCU CCG  cc      a
U       C       C   Ua  uuuuca 

Annotation confidence High

Genome context

AERX01077620.2: 274-334 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-10573a

Mature oni-miR-10573a-5p

• Accession: MIMAT0059507
• Description: Oreochromis niloticus oni-miR-10573a-5p mature miRNA
• Sequence: 1 - AACUCCAUUCCUCGAAGGCCGG - 22
• Evidence: experimental ; Illumina [1]

Mature oni-miR-10573a-3p

• Accession: MIMAT0042838
• Description: Oreochromis niloticus oni-miR-10573a-3p mature miRNA
• Sequence: 41 - UGCCCUCGAGGACUGGAGUUU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381