Stem-loop oni-mir-10577

Accession

MI0034782

Description

Oreochromis niloticus oni-mir-10577 precursor miRNA

Sequence

48350 reads, 46.0 reads per million, 106 experiments

UUCUAUCUCCUUUUCCUAACAUCguuuccuugacccgAUGAGGAAAAGAAGUUAGGAGA
...........(((((((((.((.(((((((........))))))).)).)))))))))

Structure

UUCUAUCUCCU         A  g       gac 
           UUUCCUAAC UC uuuccuu   c
           ||||||||| || |||||||    
           AGAGGAUUG AG AAAGGAG   c
-----------         A  A       UAg 

Annotation confidence Medium

Genome context

CM001455.1: 34316900-34316958 [+]

Mature oni-miR-10577-5p

• Accession: MIMAT0059513
• Description: Oreochromis niloticus oni-miR-10577-5p mature miRNA
• Sequence: 1 - UUCUAUCUCCUUUUCCUAACAUC - 23
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-10577-3p

• Accession: MIMAT0042844
• Description: Oreochromis niloticus oni-miR-10577-3p mature miRNA
• Sequence: 38 - AUGAGGAAAAGAAGUUAGGAGA - 59
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774