Stem-loop oni-mir-10580

Accession

MI0034786

Description

Oreochromis niloticus oni-mir-10580 precursor miRNA

Sequence

20876 reads, 24.0 reads per million, 67 experiments

CACGGAGCGAGACUGCAGAUUCUcugcuugugugccacgugcagCAUUCUGCAGCUUCGCUCUGUAUU
.((((((((((.(((((((....((((.((((...)))).))))...))))))).))))))))))...

Structure

--C          A       UUCU    u    u 
   ACGGAGCGAG CUGCAGA    cugc ugug  
   |||||||||| |||||||    |||| |||| g
   UGUCUCGCUU GACGUCU    gacg gcac  
UUA          C       -UAC    u    c 

Annotation confidence High

Genome context

CM001456.1: 17861785-17861852 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-10580

Mature oni-miR-10580-5p

• Accession: MIMAT0042848
• Description: Oreochromis niloticus oni-miR-10580-5p mature miRNA
• Sequence: 1 - CACGGAGCGAGACUGCAGAUUCU - 23
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-10580-3p

• Accession: MIMAT0059516
• Description: Oreochromis niloticus oni-miR-10580-3p mature miRNA
• Sequence: 45 - CAUUCUGCAGCUUCGCUCUGUAUU - 68
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774