Stem-loop pny-mir-10a-1

Accession

MI0034790

Description

Pundamilia nyererei pny-mir-10a-1 precursor miRNA

Sequence

1562651 reads, 113854.0 reads per million, 7 experiments

UACCCUGUAGAACCGAAUUUGUgugaugaaaccagauucaCAGAUUCGAUUCUAGGGGAGU
...(((.(((((.((((((((((...((....))....)))))))))).))))).)))...

Structure

UAC   G     C          -uga  a 
   CCU UAGAA CGAAUUUGUg    ug a
   ||| ||||| ||||||||||    ||  
   GGG AUCUU GCUUAGACac    ac a
UGA   G     A          uuag  c 

Annotation confidence High

Genome context

JH419214.1: 4981674-4981734 [+]

Mature pny-miR-10a-5p

• Accession: MIMAT0042852
• Description: Pundamilia nyererei pny-miR-10a-5p mature miRNA
• Sequence: 1 - UACCCUGUAGAACCGAAUUUGU - 22
• Evidence: experimental ; Illumina [1]

Mature pny-miR-10a-1-3p

• Accession: MIMAT0060254
• Description: Pundamilia nyererei pny-miR-10a-1-3p mature miRNA
• Sequence: 41 - CAGAUUCGAUUCUAGGGGAGU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381