Stem-loop pny-mir-183-1

Accession

MI0034795

Description

Pundamilia nyererei pny-mir-183-1 precursor miRNA

Sequence

111874 reads, 8797.0 reads per million, 7 experiments

UAUGGCACUGGUAGAAUUCACUGucacagcacacuaucagUGAAUUACCAUAGGGCCAUAAa
((((((..(((((..((((((((..............)))))))))))))....))))))..

Structure

--      --AC     GA        ucacag 
  UAUGGC    UGGUA  AUUCACUG      c
  ||||||    |||||  ||||||||       
  AUACCG    ACCAU  UAAGUgac      a
aA      GGAU     --        uaucac 

Annotation confidence High

Genome context

JH419375.1: 221661-221722 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-183-1

Mature pny-miR-183-5p

• Accession: MIMAT0042855
• Description: Pundamilia nyererei pny-miR-183-5p mature miRNA
• Sequence: 1 - UAUGGCACUGGUAGAAUUCACUG - 23
• Evidence: experimental ; Illumina [1]

Mature pny-miR-183-3p

• Accession: MIMAT0060258
• Description: Pundamilia nyererei pny-miR-183-3p mature miRNA
• Sequence: 41 - UGAAUUACCAUAGGGCCAUAA - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381