Stem-loop pny-mir-182

Accession

MI0034796

Description

Pundamilia nyererei pny-mir-182 precursor miRNA

Sequence

58069 reads, 4246.0 reads per million, 7 experiments

UUUGGCAAUGGUAGAACUCACAcuggugagguagauggauccggUGGUUCUAGACUUGCCAACU
.(((((((...((((((...((((((..............))))))))))))...)))))))..

Structure

-U       UGG      UCA      ugaggu 
  UUGGCAA   UAGAAC   CAcugg      a
  |||||||   ||||||   ||||||       
  AACCGUU   AUCUUG   GUggcc      g
UC       CAG      ---      uaggua 

Annotation confidence High

Genome context

JH419257.1: 481927-481990 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from pny-mir-182

Mature pny-miR-182-5p

• Accession: MIMAT0042856
• Description: Pundamilia nyererei pny-miR-182-5p mature miRNA
• Sequence: 1 - UUUGGCAAUGGUAGAACUCACA - 22
• Evidence: experimental ; Illumina [1]

Mature pny-miR-182-3p

• Accession: MIMAT0060259
• Description: Pundamilia nyererei pny-miR-182-3p mature miRNA
• Sequence: 45 - UGGUUCUAGACUUGCCAACU - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381