miRBase entry: pny-mir-21-2

Stem-loop pny-mir-21-2


Accession
MI0034800
Description
Pundamilia nyererei pny-mir-21-2 precursor miRNA


Sequence

904544 reads, 77891.0 reads per million, 7 experiments
UAGCUUAUCAGACUGGUGUUGGCuguuaagauugcaaggCGACAACAGUCUGUAGGCUGU
(((((((.(((((((.(((((.((((.......)).)).))))).)))))))))))))).

Structure
-       U       G     G  -  ua 
 UAGCUUA CAGACUG UGUUG Cu gu  a
 ||||||| ||||||| ||||| || ||  g
 GUCGGAU GUCUGAC ACAGC ga cg  a
U       -       A     g  a  uu 


Annotation confidence High
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Genome context
JH419304.1: 806642-806701 [+]

Database links

Mature pny-miR-21-5p

Accession MIMAT0042858
Description Pundamilia nyererei pny-miR-21-5p mature miRNA
Sequence 1 - UAGCUUAUCAGACUGGUGUUGGC - 23
Evidence experimental
Illumina [1]

Mature pny-miR-21-2-3p

Accession MIMAT0060263
Description Pundamilia nyererei pny-miR-21-2-3p mature miRNA
Sequence 40 - CGACAACAGUCUGUAGGCUGU - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381