Stem-loop pny-mir-146

Accession

MI0034803

Description

Pundamilia nyererei pny-mir-146 precursor miRNA

Sequence

44467 reads, 3561.0 reads per million, 7 experiments

UGAGAACUGAAUUCCAUAGAUGGugacaucuucaggugucAUCUAUGGGCUCAGUUCUUUUG
.(((((((((..((((((((...(((((((....))))))))))))))).)))))))))...

Structure

--U         AU        UGG       u 
   GAGAACUGA  UCCAUAGA   ugacauc u
   |||||||||  ||||||||   |||||||  
   UUCUUGACU  GGGUAUCU   Acugugg c
GUU         -C        ---       a 

Annotation confidence High

Genome context

JH419341.1: 1388039-1388100 [-]

Mature pny-miR-146-5p

• Accession: MIMAT0042861
• Description: Pundamilia nyererei pny-miR-146-5p mature miRNA
• Sequence: 1 - UGAGAACUGAAUUCCAUAGAUGG - 23
• Evidence: experimental ; Illumina [1]

Mature pny-miR-146-3p

• Accession: MIMAT0060267
• Description: Pundamilia nyererei pny-miR-146-3p mature miRNA
• Sequence: 41 - AUCUAUGGGCUCAGUUCUUUUG - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381