Stem-loop pny-mir-204-1

Accession

MI0034806

Description

Pundamilia nyererei pny-mir-204-1 precursor miRNA

Sequence

40191 reads, 3374.0 reads per million, 7 experiments

UUCCCUUUGUCAUCCUAUGCCUggagcugucuguaagGCAGGGACAGCAAAGGGGAGC
((((((((((..((((.((((((((....)))...)))))))))..))))))))))..

Structure

--          CA    A     ---   g 
  UUCCCUUUGU  UCCU UGCCU   gga c
  ||||||||||  |||| |||||   |||  
  AGGGGAAACG  AGGG ACGga   ucu u
CG          AC    -     aug   g 

Annotation confidence High

Genome context

JH419224.1: 2228153-2228210 [-]

Mature pny-miR-204-5p

• Accession: MIMAT0042863
• Description: Pundamilia nyererei pny-miR-204-5p mature miRNA
• Sequence: 1 - UUCCCUUUGUCAUCCUAUGCCU - 22
• Evidence: experimental ; Illumina [1]

Mature pny-miR-204-1-3p

• Accession: MIMAT0060269
• Description: Pundamilia nyererei pny-miR-204-1-3p mature miRNA
• Sequence: 38 - GCAGGGACAGCAAAGGGGAGC - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381