Stem-loop pny-mir-140

Accession

MI0034807

Description

Pundamilia nyererei pny-mir-140 precursor miRNA

Sequence

39090 reads, 3237.0 reads per million, 7 experiments

CAGUGGUUUUACCCUAUGGUAGgugacaucaugcuguucuACCACAGGGUAGAACCACGGACG
..(((((((((((((.((((((..((((......)))))))))).))))))))))))).....

Structure

---CA             A      gu    uc 
     GUGGUUUUACCCU UGGUAG  gaca  a
     ||||||||||||| ||||||  ||||   
     CACCAAGAUGGGA ACCAuc  uugu  u
GCAGG             C      --    cg 

Annotation confidence High

Genome context

JH419508.1: 521159-521221 [+]

Mature pny-miR-140-5p

• Accession: MIMAT0060272
• Description: Pundamilia nyererei pny-miR-140-5p mature miRNA
• Sequence: 1 - CAGUGGUUUUACCCUAUGGUAG - 22
• Evidence: experimental ; Illumina [1]

Mature pny-miR-140-3p

• Accession: MIMAT0042864
• Description: Pundamilia nyererei pny-miR-140-3p mature miRNA
• Sequence: 41 - ACCACAGGGUAGAACCACGGACG - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381