Stem-loop pny-mir-199-2

Accession

MI0034813

Description

Pundamilia nyererei pny-mir-199-2 precursor miRNA

Sequence

377827 reads, 32805.0 reads per million, 7 experiments

CCCAGUGUUCAGACUACCUGUUCAuugucauacugguguACAGUAGUCUGCACAUUGGUU
.(((((((.((((((((.(((.((((........)))).))))))))))).)))))))..

Structure

-C       U        C   U    guc 
  CCAGUGU CAGACUAC UGU CAuu   a
  ||||||| |||||||| ||| ||||    
  GGUUACA GUCUGAUG ACA gugg   u
UU       C        -   u    uca 

Annotation confidence High

Genome context

JH419320.1: 893032-893091 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pny-mir-199-2

Mature pny-miR-199-5p

• Accession: MIMAT0060277
• Description: Pundamilia nyererei pny-miR-199-5p mature miRNA
• Sequence: 1 - CCCAGUGUUCAGACUACCUGUUCA - 24
• Evidence: experimental ; Illumina [1]

Mature pny-miR-199-3p

• Accession: MIMAT0042866
• Description: Pundamilia nyererei pny-miR-199-3p mature miRNA
• Sequence: 40 - ACAGUAGUCUGCACAUUGGUU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381