Stem-loop pny-mir-199-3

Accession

MI0034815

Description

Pundamilia nyererei pny-mir-199-3 precursor miRNA

Sequence

643692 reads, 56039.0 reads per million, 7 experiments

CCCAGUGUUCAGACUACCUGUUCAGgaaguagugguuguACAGUAGUCUGCACAUUGGUU
.(((((((.((((((((.(((.(((..........))).))))))))))).)))))))..

Structure

-C       U        C   U   gaag 
  CCAGUGU CAGACUAC UGU CAG    u
  ||||||| |||||||| ||| |||     
  GGUUACA GUCUGAUG ACA guu    a
UU       C        -   u   ggug 

Annotation confidence High

Genome context

JH419207.1: 9939443-9939502 [+]

Mature pny-miR-199-5p

• Accession: MIMAT0060277
• Description: Pundamilia nyererei pny-miR-199-5p mature miRNA
• Sequence: 1 - CCCAGUGUUCAGACUACCUGUUCAG - 25
• Evidence: experimental ; Illumina [1]

Mature pny-miR-199-3p

• Accession: MIMAT0042866
• Description: Pundamilia nyererei pny-miR-199-3p mature miRNA
• Sequence: 40 - ACAGUAGUCUGCACAUUGGUU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381