Stem-loop pny-mir-27b

Accession

MI0034817

Description

Pundamilia nyererei pny-mir-27b precursor miRNA

Literature search

1 open access papers mention pny-mir-27b
(1 sentences)

Sequence

61665 reads, 5273.0 reads per million, 7 experiments

AGAGCUUAGCUGAUUGGUGAACAGugauugauucccucuuugUUCACAGUGGCUAAGUUCUGC
(((((((((((.((((.(((((((.((.........)).))))))))))))))))))))))..

Structure

--           G    G       u  uug 
  AGAGCUUAGCU AUUG UGAACAG ga   a
  ||||||||||| |||| ||||||| ||   u
  UCUUGAAUCGG UGAC ACUUguu cu   u
CG           -    -       u  ccc 

Annotation confidence High

Genome context

JH419211.1: 118377-118439 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pny-mir-27b

Mature pny-miR-27b-5p

• Accession: MIMAT0060278
• Description: Pundamilia nyererei pny-miR-27b-5p mature miRNA
• Sequence: 1 - AGAGCUUAGCUGAUUGGUGAACAG - 24
• Evidence: experimental ; Illumina [1]

Mature pny-miR-27b-3p

• Accession: MIMAT0042867
• Description: Pundamilia nyererei pny-miR-27b-3p mature miRNA
• Sequence: 43 - UUCACAGUGGCUAAGUUCUGC - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381