Stem-loop pny-mir-30c

Accession

MI0034819

Description

Pundamilia nyererei pny-mir-30c precursor miRNA

Sequence

118533 reads, 10312.0 reads per million, 7 experiments

UGUAAACAUCCUACACUCUCGGCaucugcccucugguggCCGGGAGUGGGACUGUUUGCACU
(((((((((((..(((((((((((((........))).))))))))))))).))))))))..

Structure

--        -   UA          -   ugc 
  UGUAAACA UCC  CACUCUCGGC auc   c
  |||||||| |||  |||||||||| |||    
  ACGUUUGU AGG  GUGAGGGCCg ugg   c
UC        C   --          g   ucu 

Annotation confidence High

Genome context

JH419373.1: 137271-137332 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-30c

Mature pny-miR-30c-5p

• Accession: MIMAT0042869
• Description: Pundamilia nyererei pny-miR-30c-5p mature miRNA
• Sequence: 1 - UGUAAACAUCCUACACUCUCGGC - 23
• Evidence: experimental ; Illumina [1]

Mature pny-miR-30c-3p

• Accession: MIMAT0060280
• Description: Pundamilia nyererei pny-miR-30c-3p mature miRNA
• Sequence: 40 - CCGGGAGUGGGACUGUUUGCACU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381