Stem-loop pny-let-7a-6

Accession

MI0034824

Description

Pundamilia nyererei pny-let-7a-6 precursor miRNA

Sequence

98931 reads, 8536.0 reads per million, 7 experiments

UGAGGUAGUAGGUUGUAUAGUUugugggauggacucaauccuauucaggugauaaCUAUACAGCCUAUUACCUUCCU
.(((((((((((((((((((((.(((((((.......))))))).........)))))))))))))))))))))...

Structure

--U                     --------u       gg 
   GAGGUAGUAGGUUGUAUAGUU         gugggau  a
   |||||||||||||||||||||         |||||||  c
   UUCCAUUAUCCGACAUAUCaa         uauccua  u
UCC                     uaguggacu       ac 

Annotation confidence Not enough data

Genome context

JH419239.1: 3285764-3285840 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-let-7a-6

Mature pny-let-7a-5p

• Accession: MIMAT0042871
• Description: Pundamilia nyererei pny-let-7a-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAGGUUGUAUAGUU - 22
• Evidence: experimental ; Illumina [1]

Mature pny-let-7a-6-3p

• Accession: MIMAT0060287
• Description: Pundamilia nyererei pny-let-7a-6-3p mature miRNA
• Sequence: 56 - CUAUACAGCCUAUUACCUUCCU - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381