Stem-loop pny-let-7a-4

Accession

MI0034825

Description

Pundamilia nyererei pny-let-7a-4 precursor miRNA

Sequence

94993 reads, 8263.0 reads per million, 7 experiments

UGAGGUAGUAGGUUGUAUAGUUuuagggucauacccacacugggagauaaCUAUUCAACCUACUGUCUUUCc
.((((((((((((((.((((((.....(((...((((...)))).))))))))).))))))))))))))...

Structure

--U              U      uuagg   aua    c 
   GAGGUAGUAGGUUG AUAGUU     guc   ccca  
   |||||||||||||| ||||||     |||   |||| a
   UUCUGUCAUCCAAC UAUCaa     uag   gggu  
cCU              U      -----   --a    c 

Annotation confidence High

Genome context

JH419226.1: 4359573-4359644 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-let-7a-4

Mature pny-let-7a-5p

• Accession: MIMAT0042871
• Description: Pundamilia nyererei pny-let-7a-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAGGUUGUAUAGUU - 22
• Evidence: experimental ; Illumina [1]

Mature pny-let-7a-4-3p

• Accession: MIMAT0060285
• Description: Pundamilia nyererei pny-let-7a-4-3p mature miRNA
• Sequence: 51 - CUAUUCAACCUACUGUCUUUC - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381