Stem-loop pny-mir-25

Accession

MI0034828

Description

Pundamilia nyererei pny-mir-25 precursor miRNA

Sequence

291886 reads, 25678.0 reads per million, 7 experiments

AGGCGGAGACUUGGGCAAUUGCcgggcaucccagagggCAUUGCACUUGUCUCGGUCUGA
((((.(((((..(.(((((.((((((...)))....)))))))).)..))))).))))..

Structure

--    G     UU G     U   ----   c 
  AGGC GAGAC  G GCAAU GCc    ggg  
  |||| |||||  | ||||| |||    ||| a
  UCUG CUCUG  C CGUUA Cgg    ccc  
AG    G     UU A     -   gaga   u 

Annotation confidence High

Genome context

JH419213.1: 70365-70424 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from pny-mir-25

Mature pny-miR-25-5p

• Accession: MIMAT0060288
• Description: Pundamilia nyererei pny-miR-25-5p mature miRNA
• Sequence: 1 - AGGCGGAGACUUGGGCAAUUGC - 22
• Evidence: experimental ; Illumina [1]

Mature pny-miR-25-3p

• Accession: MIMAT0042872
• Description: Pundamilia nyererei pny-miR-25-3p mature miRNA
• Sequence: 39 - CAUUGCACUUGUCUCGGUCUGA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381